Dr. Alexandros Stamatakis

Postdoctoral Researcher

TEACHING

 

Co-Supervision of Ph.D. Theses (in progress)

· Michael Ott (Technical University of Munich), High Performance Computing in Phylogenetics. In cooperation with Technical University of Munich.

· Filip Blagojevic (Virginia Tech), Implementation of RAxML on an IBM CELL Architecture. In cooperation with Virginia Tech.

Supervised Diploma/Master Theses (completed)

· Masoud Alipour  (EPFL),  Phylogeny Benchmark, RAxML Web-Server, Properties of Bootstrapping.

· Maria Charalambous (University of Cyprus),  Efficient Execution of non-Graphics , General Purpose Applications, using Graphics Processing Units. In cooperation with University of Cyprus.

· Michael Ott (Technical University of Munich), RAxML@home: Specification and Development of a globally distributed software architecture for Computation of Phylogenetic Trees.

· Georg Hoesch (Technical University of Munich), Specification and Development of a Monitoring-System for the Distributed Interactive Engineering Toolbox (DIET). In cooperation with Ecole Normale Superieure de Lyon.

· Bert van Heukelom (Technical University of Munich), Development of Strategies for the Integration of Parallel Applications into the DIET (Distributed Interactive Engineering Toolbox) Environment by Example of a Program for Genome Analysis. In cooperation with Ecole Normale Superieure de Lyon.

Supervised Project Work (completed)

· Margarida Faria (EPFL), Design of a Partition Analysis Tool for Multi-Gene Alignments.

· Jerome Pasquier (EPFL), Scalability of RAxML on Huge Single-Gene Alignments. In cooperation with DOE Joint Genome Institute.

· Christoph Lauter (Technical University of Munich), Optimization of the SCSLIB Library for the Itanium IA64 Architecture. In cooperation with Ecole Normale Superieure de Lyon.

· Michael Ott (Technical University of Munich), Integration of an Application from the Area of Genome Sequence Analysis into a JAVA/CORBA Environment.

· Cornel Babel (Technical University of Munich), Design and Implementation of Distance-based Heuristics in a Program for Genome Sequence Analysis.

Summer 2004

· Supervision of 4 groups for the practical course: "Technical Foundations of Computer Science" (Technische Grundlagen der Informatik).

· Participation in the preparation and support of the practical course: "Cluster programming with Java" (Vorbereitung und Betreuung des Praktikums: "Cluster-Programmierung mit Java", 6 SWS).

Winter 2003/2004

· Supervision of 2 groups for the practical course: "Technical Foundations of Computer Science" (Technische Grundlagen der Informatik).

Summer 2003

· Supervision of 15 groups for the practical course: "Technical Foundations of Computer Science" (Technische Grundlagen der Informatik).

· Participation in the preparation and support of the practical course: "Cluster programming with Java" (Vorbereitung und Betreuung des Praktikums: "Cluster-Programmierung mit Java", 6 SWS).

Winter 2002/2003

· Supervision of 5 groups for the practical course: "Technical Foundations of Computer Science" (Technische Grundlagen der Informatik).

Summer 2002:

· Participation in the preparation and support of the practical course: "Cluster programming with Java" (Vorbereitung und Betreuung des Praktikums: "Cluster-Programmierung mit Java", 6 SWS).

· Supervision of 12 groups for the practical course: "Technical Foundations of Computer Science" (Technische Grundlagen der Informatik).

Winter 2001/2002:

· Exercise course within the framework of the course "Introduction to Computer Science III" (Tutorübung zur Vorlesung "Einführung in die Informatik III", 4 SWS).

Winter 2000/2001:

· Preparation of additional exercises and a test-examination for special holiday-courses intended for weak students within the framework of the course "Introduction to Computer Science I" (Vorbereitung von Zusatzaufgaben und einer Probeklausur für die Ferienlernhilfe zur Vorlesung "Einführung in die Informatik I").

· Exercise course within the framework of the course "Introduction to Computer Science I" (Tutorübung zur Vorlesung "Einführung in die Informatik I", 3 SWS).